Metrics | |||||||||||||||||
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Speed (Duration of Procedure) | Throughput (# Samples / Day) | Scale (Minimum Input Volume) | Scale (Maximum Input Volume) | Resolution (EVP Size LOD) | Sensitivity (EVP Concentration LOD) | Sensitivity (# Cargo / EVP LOD) | Instrument Cost | per Sample Cost | |||||||||
Technologies | Technology Type | Bulk or Single Particle | Phase | Separation vs. Characterization | Physical Basis of Method | Low:
Days; Med: Hours; High: Minutes |
Low:
1-9/Day; Med: 10-99/Day; High: 100+/Day |
Low:
<100
uL; Med: 0.1-1 mL; High: >1-100 mL; Very High: >100mL |
Low:
<100
uL; Med: 0.1-1 mL; High: >1-100 mL; Very High: >100mL |
Low:
>200
Nm; Med: 80-200 Nm; High: <80 Nm |
Low:
>1010/mL; Med: 107-1010/mL; High: <107/mL |
Low:
>100/EVP; Med: 20-100/EVP; High: <20/EVP |
Low:
<$15K; Med: $15K-$50K; High: $51K-200K; Very High: >$200K |
Low:
<$5; Med: $5-20; High: >$21-100; Very High: >$100 |
Technology (Vendor) | Technology (ERCC2 Research Group) | |
Fractionation | |||||||||||||||||
Ultracentrifugation (UC) | UC | Bulk | Fluid | Separation | Density | Low | Low | High | High | N/A | N/A | N/A | High | Low | Beckman, Thermo | UC VUMC |
|
Density Gradient Ultracentrifugation (DGUC) | DGUC | Bulk | Fluid | Separation | Buoyant Density | Low | Low | High | High | N/A | N/A | N/A | High | Med | Iodixanol, Sucrose, Beckman, Thermo | DGUC UCSF |
|
Size Exclusion Chromatography (SEC) | SEC | Bulk | Fluid | Separation | Size | High | Med | Med | Med | N/A | N/A | N/A | Low | Med | Sepharose, Superdex (Cytiva), Izon, Exospin (Cell Guidance Systems) | Izon qEV UCSF |
|
Size Exclusion Chromatography (SEC/FPLC/HPLC) | SEC/FPLC/HPLC | Bulk | Fluid | Separation | Size | High | Med | Med | Med | N/A | N/A | N/A | Very High | Low | Thermo, BioRad | FPLC VUMC HPLC UC Davis |
|
Ion Exchange Chromatography (IEC) | IEC | Bulk | Fluid | Separation | Charge | High | Med | Med | High | N/A | N/A | N/A | Low | Low | Cytiva, BioRad, Qiagen ExoEasy | ||
Ultrafiltration (UF) | Filtration | Bulk | Fluid | Separation | Size | High | Med | Med | Med | N/A | N/A | N/A | Low | Med | Amicon (Millipore); Nanosep (Pall) | ||
Tangential Flow Filt (TFF), Asymmetric Flow Field Flow Fractionation (AF4) | Filtration | Bulk | Fluid | Separation | Size | Med | Med | Med | Very High | High | Low | AF4 (Wyatt) | AF4 JHU NanoEX UND |
||||
Polymer Precipitation (PP) | PP | Bulk | Fluid | Separation | Solubility | Low | Med | Med | High | N/A | N/A | N/A | Low | Low | PEG, ExoQuick (SBI) | PP UCSD |
|
Immunocapture (Manual) | IC/manual | Bulk | Solid | Separation | Specific Epitopes | Med | Med | Med | High | N/A | N/A | N/A | Low | Med | Thermo, Miltenyi, BioLegend | Immuno-Magnetic Separation UCSD MGH |
|
Immunocapture (Automated) | IC/automated | Bulk | Solid | Separation | Specific Epitopes | Med | Med | Med | High | N/A | N/A | N/A | High | Med | Immunocapture + ECL MesoScale Immunoseq MesoScale TFF/iSUF OSU MNM UND |
||
Acoustofluidic Separation (AFS) | AFS | Bulk | Fluid | Separation | Size | Med | Low | Med | Med | N/A | N/A | N/A | High | Low | Ascent Bionano | AFS UCLA/Duke |
|
Isoelectric Focusing (CIF) | IEF | Bulk | Fluid | Separation | Isoelectric Point | Low | Low | Med | High | N/A | N/A | N/A | High | Low | Continuous Isoelectric Separation (CIF) UND |
||
Bulk Analysis | |||||||||||||||||
Protein Quantification Assay | Bulk | Fluid | Characterization | Peptide Bonds (BCA and Lowry); Basic Amino Acids (Bradford); Protein-Specific Fluorescent Dye (Qubit Protein Assay) | High | Med | Low | Low | N/A | Low | N/A | Low-Med | Low | Biccinic Acid Assay (BCA); Bradford; Qubit (Thermo); Lowry | UCSF VUMC UCSD |
||
Phospholipid Assay | Bulk | Fluid | Characterization | Carbon-Carbon Double Bonds | High | Med | Low | Low | N/A | Low | N/A | Med | Low | Sulfovanillin Assay (SVA) | |||
Nucleic Acid Assay | Bulk | Fluid | Characterization | Size/Charge (Bioanalyzer); Nucleic-Acid Specific Fluorescent Dye (Qubit) | High | Med | Low | Low | N/A | Low | N/A | Med | Low | Agilent Bioanalyzer | UCSD |
||
Immunoblot (IB) | Bulk | Fluid | Characterization | Size/Charge and Specific Epitope | Med | Med | Low | Low | N/A | Low | N/A | Low | Low | Western Blot | UCSD UCSF MGH JHU |
||
ELISA (ELISA) | Bulk | Fluid | Characterization | Specific Epitopes | Med | Med | Low | Low | N/A | Low | N/A | Med | Low | ELISA | |||
Multiplexed Immunocapture-Fluorescence (Immunocapture+ECL) | IC/IF | Bulk | Solid | Both | Specific Epitopes | Med | Med | Low | Low | N/A | Low | N/A | High | Med | Custom Bead Assays (Luminex, Spherotech, Bangs); MesoScale Microwell-Array IC/ECL | Immunocapture + ECL MesoScale |
|
Multiplexed Immunocapture-Sequencing (ImmunoSeq) | IC/seq | Bulk | Solid | Both | Specific Epitopes | Low | Med | Low | Low | N/A | Unknown | N/A | High | Med | Immunoseq MesoScale |
||
Isoelectric Detection | IEM | Bulk | Solid | Characterization | Isoelectric Point | Low | Low | Low | Low | N/A | High | N/A | High | Low | IEM Sensor Technology UND |
||
Mass Spectrometry (MS) | Bulk | Fluid | Characterization | Mass-to-Charge Ratio | Low | Low | Low | Low | N/A | Low | N/A | Very High | Med | Bruker, Thermo | UCSD UCSF VUMC JHU |
||
PCR/RT-PCR | Bulk | Fluid | Characterization | Nucleic Acid Sequence | Med | Med | Low | Low | N/A | Low | N/A | High | Low | PCR, qPCR | UCSD |
||
Sequencing (SEQ) | Bulk | Fluid | Characterization | Nucleic Acid Sequence | Low | Med | Low | Low | N/A | Low | N/A | Very High | High | Sequencing, RNA-Seq | UCSD TGEN VUMC UCLA MGH |
||
Dynamic Light Scattering (DLS) | DLS/NTA | Bulk | Fluid | Characterization | Brownian Motion and Refractive Index | High | Low | Med | Low | Low | Low | N/A | High | Low | Beckman | DLS/NTA UW |
|
Single Particle Analysis | |||||||||||||||||
Electron Microscopy (TEM/CryoEM) | EM | Single | Solid / Fluid | Characterization | Deflection Of Electron Beam | Med | Med | Low | Low | High | Med | High | Very High | Med | TEM, SEM, Cryo-EM | ||
Atomic Force Microscopy (AFM) | AFM | Single | Solid | Characterization | Topography | Med | Med | Low | Low | High | Med | High | Very High | Med | AFM (Thermo, FEI, Others) | ||
Optical Imaging (OI) | OI | Single | Solid | Characterization | Fluorescence Detection | Low | Low | Low | Low | High | Med | High | Very High | High | ARC (Spectradyne), qSMLM (ONI), Exoview (Unchained Labs), ARC (Spectradyne) | qSMLM COH/MGH Microarray/TIRF OSU Molecular Beacons HMS |
|
Nanoparticle Tracking Analysis (NTA) | NTA | Single | Fluid | Characterization | Brownian Motion and Refractive Index | High | Med | Med | Low | Med | Med | Low | High | Low | NanoSight NS300 (Malvern), ZetaView (Particle Metrix), Envision3 (Hyperion), MANTA (Bruker) | ||
Resisitive Pulse Sensing (RPS) | RPS | Single | Fluid | Characterization | Displacement Of Conductive Fluid | High | Med-High | Low | Low | Med | Med | Low | High | Med | nCS1 (Spectradyne), Exoid (Izon), ARC (Spectradyne) | ||
Flow Cytometry (FC) | FC | Single | Fluid | Characterization | Light Scatter and Fluorescence Detection | Med | Med-High | Low | Low | High | Med | High | High | Med | CytoFlex (Beckman), Astrios EQ (Beckman), CellStream (Luminex), Imagestream (Luminex), Aurora (Cytek), Symphony (BD), A-60 MICRO_PLUS (Apogee), NanoAnalyzer (NanoFCM), vFC (Cellarcus) | FC UCSD FC UCLA FC UCSF FC MGH FC NCI FC JHU Nanoscale Flow Analyzer UW AFS Single EV Sorter UCLA/Duke FCM-Pass NCI |
|
Flow Cytometric Sorting | FC + Sorting | Single | Fluid | Both | Light Scatter and Fluorescence Detection | Low | Low | Med | Low | Low | Low | Low | High | High | Astrios (Beckman), FACSAria (Becton Dickinson) | NanoFACS NCI FAVS VUMC |
|
Note | High Is Better | High Is Better | Low Is Better | High Is Better | High Is Better | High Is Better | High Is Better | Low Is Better | Low Is Better |