The Extracellular RNA Communication Consortium has published 700+ research articles since its inception in 2013. Articles in the category “Resources and Technology” are listed here in reverse chronological order. Each article is tagged by category; you can browse different categories using the drop-down menu at the top of the page or by clicking on the tags of multi-category articles.
Witwer KW et al.
Updating MISEV: Evolving the minimal requirements for studies of extracellular vesicles.
J Extracell Vesicles (2021) 10:e12182.
Hao N et al.
Acoustofluidic multimodal diagnostic system for Alzheimer’s disease.
Biosens Bioelectron (2022) 196:113730.
Bittel M et al.
J Extracell Vesicles (2021) 10:e12159.
Valkov N et al.
snRNA sequencing defines signaling by RBC-derived extracellular vesicles in the murine heart.
Zhong R et al.
Acoustofluidic droplet sorter based on single phase focused transducers.
Zhang Y et al.
Nanoparticle-assisted detection of nucleic acids in a polymeric nanopore with a large pore size.
Biosens Bioelectron (2022) 196:113697.
van der Pol E, Welsh JA & Nieuwland R.
J Thromb Haemost (2022) 20:245-251.
Verweij FJ et al.
The power of imaging to understand extracellular vesicle biology in vivo.
Nat Methods (2021) 18:1013-1026.
Li J et al.
Park J et al.
Nat Biomed Eng (2021) 5:678-689.
Giraldez MD & Tewari M.
Phospho-RNAseq profiling of extracellular mRNAs and lncRNAs.
Methods Mol Biol (2021) 2348:257-271.
Zhang P et al.
Acoustoelectronic nanotweezers enable dynamic and large-scale control of nanomaterials.
Oliveira-Jr GP et al.
Electrophoretic mobility shift as a molecular beacon-based readout for miRNA detection.
Biosens Bioelectron (2021) 189:113307.
Thompson L et al.
Quantification of cellular densities and antigenic properties using magnetic levitation.
Guo C et al.
Choice of selectable marker affects recombinant protein expression in cells and exosomes.
J Biol Chem (2021) 297:100838.
Zhao S et al.
Arab T et al.
J Extracell Vesicles (2021) 10:e12079.
Zhang J et al.
Kunert-Graf JM, Sakhanenko NA & Galas DJ.
Optimized permutation testing for information theoretic measures of multi-gene interactions.
BMC Bioinformatics (2021) 22:180.
Jiang Y et al.
Angew Chem Int Ed Engl (2021) 60:13470-13475.
Andronico LA et al.
Sizing extracellular vesicles using membrane dyes and a single molecule-sensitive flow analyzer.
Anal Chem (2021) 93:5897-5905.
Tosar JP et al.
RI-SEC-seq: Comprehensive profiling of nonvesicular extracellular RNAs with different stabilities.
Martin-Jaular L et al.
Welsh JA et al.
A simple, high-throughput method of protein and label removal from extracellular vesicle samples.
Nanoscale (2021) 13:3737-3745.
Zhu H et al.
Acoustohydrodynamic tweezers via spatial arrangement of streaming vortices.
Gu Y et al.
Acoustofluidic centrifuge for nanoparticle enrichment and separation.
Thistlethwaite LR et al.
PLoS Comput Biol (2021) 17:e1008550.
Morales-Kastresana A, Welsh JA & Jones JC.
Detection and sorting of extracellular vesicles and viruses using nanoFACS.
Curr Protoc Cytom (2020) 95:e81.
Xie Y et al.
Microfluidic isolation and enrichment of nanoparticles.
ACS Nano (2020) 14:16220–16240.
Burnie J et al.
Flow virometry quantification of host proteins on the surface of HIV-1 pseudovirus particles.
Hao N et al.
Acoustofluidics-assisted fluorescence-SERS bimodal biosensors.
Zhang P et al.
Deterministic droplet coding via acoustofluidics.
Welsh JA et al.
J Extracell Vesicles (2020) 9:1816641.
Kaczor-Urbanowicz KE et al.
Reviews on current liquid biopsy for detection and management of pancreatic cancers.
Huang Y et al.
J Extracell Vesicles (2020) 9:1785746.
Welsh JA & Jones JC.
Small particle fluorescence and light scatter calibration using FCMPASS software.
Curr Protoc Cytom (2020) 94:e79.
Tian Z et al.
Royo F et al.
Suea-Ngam A et al.
Zhong Z et al.
Hardware design and fault-tolerant synthesis for digital acoustofluidic biochips.
IEEE Trans Biomed Circuits Syst (2020) 14:1065-1078.
Liu P et al.
Acoustofluidic multi-well plates for enrichment of micro/nano particles and cells.
Lurie E et al.
Zhang P et al.
Acoustic streaming vortices enable contactless, digital control of droplets.
Jin G et al.
Acoustofluidic scanning nanoscope with high resolution and large field of view.
Gu Y et al.
Acoustofluidic holography for micro- to nanoscale particle manipulation.
ACS Nano (2020) 14:14635-14645.
Abels ER et al.
Zhang P et al.
Annu Rev Anal Chem (Palo Alto Calif) (2020) 13:17-43.
Sung BH et al.
Hao N et al.
Acoustofluidics-assisted engineering of multifunctional three-dimensional zinc oxide nanoarrays.
Maas SLN et al.
Glioblastoma hijacks microglial gene expression to support tumor growth.
J Neuroinflammation (2020) 17:120.
Hunter-Zinck H et al.
Genotyping array design and data quality control in the Million Veteran Program.
Am J Hum Genet (2020) 106:535-548.
Zhao S et al.
Wang C, Senapati S & Chang HC.
Electrophoresis (2020) 41:1878-1892.
Bachman H et al.
Low-frequency flexural wave based microparticle manipulation.
Welsh JA et al.
J Extracell Vesicles (2020) 9:1713526.
Bachman H et al.
An acoustofluidic device for efficient mixing over a wide range of flow rates.
Wei S et al.
A rapid and simple bead-bashing-based method for genomic DNA extraction from mammalian tissue.
Biotechniques (2020) 68:240-244.
Xie Y et al.
Acoustic cell separation based on biophysical properties.
J Biomech Eng (2020) 142:0310051-9.
Oliveira GP Jr et al.
Detection of extracellular vesicle RNA using molecular beacons.
Rima XY et al.
Surface engineering within a microchannel for hydrodynamic and self-assembled cell patterning.
Biomicrofluidics (2020) 14:014104.
Godoy PM et al.
Cell Rep (2019) 29:4212-4222.e5.
Yang Z et al.
Large-scale generation of functional mRNA-encapsulating exosomes via cellular nanoporation.
Nat Biomed Eng (2020) 4:69-83.
Zaborowski MP et al.
Ishiguro K, Yan IK & Patel T.
Isolation of tissue extracellular vesicles from the liver.
Morales-Kastresana A et al.
High-fidelity detection and sorting of nanoscale vesicles in viral disease and cancer.
J Extracell Vesicles (2019) 8:1597603.
Gyuris A et al.
Physical and molecular landscapes of mouse glioma extracellular vesicles define heterogeneity.
Cell Rep (2019) 27:3972-3987.e6.
Wei Z et al.
Giraldez MD et al.
Akat KM et al.
Detection of circulating extracellular mRNAs by modified small-RNA-sequencing analysis.
Duong P et al.
Zhang Q et al.
Transfer of functional cargo in exomeres.
Cell Rep (2019) 27:940-954.e6.
Rozowsky J et al.
exceRpt: A comprehensive analytic platform for extracellular RNA profiling.
Cell Syst (2019) 8:352-357.e3.
Murillo OD et al.
Srinivasan S et al.
Small RNA sequencing across diverse biofluids identifies optimal methods for exRNA isolation.
Zaborowski MP et al.
Cell Rep (2019) 27:255-268.e6.
Belair CD et al.
Thery C, Witwer KW, et al.
J Extracell Vesicles (2018) 7:1535750.
Yu H et al.
beRBP: binding estimation for human RNA-binding proteins.
Nucleic Acids Res (2019) 47:e26.
Godoy PM et al.
Large differences in small RNA composition between human biofluids.
Haraszti RA et al.
Wei F et al.
J Mol Diagn (2018) 20:738-742.
Giraldez MD et al.
Comprehensive multi-center assessment of small RNA-seq methods for quantitative miRNA profiling.
Nat Biotechnol (2018) 36:746-757.
Dluzen DF et al.
Extracellular RNA profiles with human age.
Max KEA et al.
Human plasma and serum extracellular small RNA reference profiles and their clinical utility.
Proc Natl Acad Sci USA (2018) 115 :E5334-E5343.
Heintz-Buschart A et al.
Small RNA profiling of low biomass samples: Identification and removal of contaminants.
Yeri A et al.
Evaluation of commercially available small RNASeq library preparation kits using low input RNA.
Vujic A et al.
Exercise induces new cardiomyocyte generation in the adult mammalian heart.
Li F et al.
Characterization of human salivary extracellular RNA by next-generation sequencing.
Clin Chem (2018) 64:1085-1095.
Li K et al.
Methods Mol Biol (2018) 1740:69-83.
Filant J et al.
Isolation of extracellular RNA from serum/plasma.
Methods Mol Biol (2018) 1740:43-57.
Matsuda A & Patel T.
Milk-derived extracellular vesicles for therapeutic delivery of small interfering RNAs.
Methods Mol Biol (2018) 1740:187-197.
Li K et al.
Isolation of plasma lipoproteins as a source of extracellular RNA.
Methods Mol Biol (2018) 1740:139-153.
Yan IK, Lohray R & Patel T.
Droplet digital PCR for quantitation of extracellular RNA.
Methods Mol Biol (2018) 1740:155-162.
Shukla N, Yan IK & Patel T.
Multiplexed detection and quantitation of extracellular vesicle RNA expression using NanoString.
Methods Mol Biol (2018) 1740:177-185.
Etheridge A et al.
Preparation of small RNA NGS libraries from biofluids.
Methods Mol Biol (2018) 1740:163-175.
Didiot MC et al.
Loading of extracellular vesicles with hydrophobically modified siRNAs.
Methods Mol Biol (2018) 1740:199-214.
Yan IK, Berdah VX & Patel T.
Isolation of extracellular RNA from bile.
Methods Mol Biol (2018) 1740:59-67.
Shao H et al.
New technologies for analysis of extracellular vesicles.
Chem Rev (2018) 118:1917-1950.
Foye C et al.
Comparison of miRNA quantitation by Nanostring in serum and plasma samples.
Slenter DN et al.
WikiPathways: a multifaceted pathway database bridging metabolomics to other omics research.
Nucleic Acids Res (2018) 46:D661-D667.
Amorim MG et al.
Wei Z et al.
Coding and noncoding landscape of extracellular RNA released by human glioma stem cells.
Nolan JP & Duggan E.
Analysis of individual extracellular vesicles by flow cytometry.
Methods Mol Biol (2018) 1678:79-92.
Wu X et al.
sRNAnalyzer: a flexible and customizable small RNA sequencing data analysis pipeline.
Nucleic Acids Res (2017) 45:12140-12151.
Kaczor-Urbanowicz KE et al.
Novel approaches for bioinformatic analysis of salivary RNA sequencing data for development.
Wu AY & Lai CP.
Tracking extracellular vesicles delivery and RNA translation using multiplexed reporters.
Methods Mol Biol (2017) 1660:255-265.
Gogakos T et al.
Pathan M et al.
A novel community driven software for functional enrichment analysis of extracellular vesicles data.
J Extracell Vesicles (2017) 6:1321455.
Saugstad JA et al.
Analysis of extracellular RNA in cerebrospinal fluid.
J Extracell Vesicles (2017) 6:1317577.
Jayaram H et al.
Invest Ophthalmol Vis Sci (2017) 58:2884-2890.
Mateescu B et al.
J Extracell Vesicles (2017) 6:1286095.
Yeri A et al.
Total extracellular small RNA profiles from plasma, saliva, and urine of healthy subjects.
Nolan JP & Jones JC.
Detection of platelet vesicles by flow cytometry.
Grossman RL et al.
Collaborating to compete: Blood Profiling Atlas in Cancer (BloodPAC) Consortium.
Clin Pharmacol Ther (2017) 101:589-592.
Ong WQ et al.
Live cell imaging of endogenous mRNA using RNA-based fluorescence “Turn-On” probe.
ACS Chem Biol (2017) 12:200-205.
Danielson KM et al.
High throughput sequencing of extracellular RNA from human plasma.
Lee I et al.
The importance of standardization on analyzing circulating RNA.
Mol Diagn Ther (2017) 21:259-268.
Baldwin S et al.
Analyzing the miRNA content of extracellular vesicles by fluorescence nanoparticle tracking.
Nanomedicine (2017) 13:765-770.
Majem B et al.
RNA sequencing analysis of salivary extracellular RNA.
Methods Mol Biol (2017) 1537:17-36.
Haraszti RA et al.
J Extracell Vesicles (2016) 5:32570.
Wei Z et al.
Fetal bovine serum RNA interferes with the cell culture derived extracellular RNA.
Higginbotham JN et al.
J Extracell Vesicles (2016) 5:29254.
Freedman JE et al.
Corrigendum: Diverse human extracellular RNAs are widely detected in human plasma.
Shah R et al.
Discordant expression of circulating microRNA from cellular and extracellular sources.
Freedman JE et al.
Diverse human extracellular RNAs are widely detected in human plasma.
Cheung KH et al.
Extending gene ontology in the context of extracellular RNA and vesicle communication.
J Biomed Semantics (2016) 7:19.
Akers JC et al.
Optimizing preservation of extracellular vesicular miRNAs derived from clinical cerebrospinal fluid.
Cancer Biomark (2016) 17:125-32.
Tanriverdi K et al.
Anal Biochem (2016) 501:66-74.
Zaborowski MP et al.
Extracellular vesicles: Composition, biological relevance, and methods of study.
Xiao H et al.
Akers JC et al.
Yuan T et al.
Plasma extracellular RNA profiles in healthy and cancer patients.
Ben-Dov IZ et al.
Danielson KM et al.
Diurnal variations of circulating extracellular vesicles measured by nano flow cytometry.
Keerthikumar S et al.
ExoCarta: A web-based compendium of exosomal cargo.
J Mol Biol (2016) 428:688-692.
Schwarzenbach H et al.
Data normalization strategies for microRNA quantification.
Ainsztein AM et al.
The NIH Extracellular RNA Communication Consortium.
J Extracell Vesicles (2015) 4:27493.
Subramanian SL et al.
J Extracell Vesicles (2015) 4:27497.
Laurent LC et al.
J Extracell Vesicles (2015) 4:26533.
Li X, Mauro M & Williams Z.
Comparison of plasma extracellular RNA isolation kits reveals kit-dependent biases.
Lai CP et al.
Shao H et al.
Chip-based analysis of exosomal mRNA mediating drug resistance in glioblastoma.
Tewari M.
A functional extracellular transcriptome in animals? Implications for biology, disease and medicine.
Chiang SH et al.
RNAPro*SAL: a device for rapid and standardized collection of saliva RNA and proteins.
Biotechniques (2015) 58:69-76.
Lotvall J et al.
J Extracell Vesicles (2014) 3:26913.
Kim DK et al.
EVpedia: a community web portal for extracellular vesicles research.
Bioinformatics (2015) 31:933-9.
Bahn JH et al.
The landscape of microRNA, Piwi-interacting RNA, and circular RNA in human saliva.
Kutmon M et al.
Takahashi K et al.
Analysis of extracellular RNA by digital PCR.
Grange C et al.
Int J Mol Med (2014) 33:1055-63.
Ben-Dov IZ et al.
Lai CP et al.
Dynamic biodistribution of extracellular vesicles in vivo using a multimodal imaging reporter.
Chen WW et al.
